R/get_sig_cancer_type_index.R
get_sig_cancer_type_index.RdObtain Signature Index for Cancer Types
signature type.
sequencing type.
data source.
keyword to search in the signature index database.
a list.
l1 <- get_sig_cancer_type_index()
#>
#>
#> |full name |signature type |
#> |:-----------------------------------|:--------------------------------|
#> |Adrenocortical carcinoma |1,2,4,5,6,13,18 |
#> |Acute lymphoblastic leukemia |1,2,5,13 |
#> |Acute myelogenous leukemia |1,5 |
#> |Bladder |1,2,5,10,13 |
#> |Breast |1,2,3,5,6,8,10,13,17,18,20,26,30 |
#> |Cervix |1,2,5,6,10,13,26 |
#> |Chondrosarcoma |1,5 |
#> |B-cell chronic lymphocytic leukemia |1,2,5,9,13 |
#> |Colorectum |1,5,6,10 |
#> |Glioblastoma |1,5,11 |
#> |Glioma Low grade |1,5,6,14 |
#> |Head and neck |1,2,4,5,7,13 |
#> |Kidney Chromophobe |1,5,6 |
#> |Kidney Clear Cell |1,5,6,27 |
#> |Kidney Papillary |1,2,5,13 |
#> |Liver |1,4,5,6,12,16,17,22,23,24 |
#> |Lung Adeno |1,2,4,5,6,13,17 |
#> |Lung Small Cell |1,4,5,15 |
#> |Lung Squamous |1,2,4,5,13 |
#> |Lymphoma B-cell |1,2,5,9,13,17 |
#> |Lymphoma Hodgkin |1,5,25 |
#> |Medulloblastoma |1,5,8 |
#> |Melanoma |1,5,7,11,17 |
#> |Masopharyngeal Carcinoma |1,2,5,13 |
#> |Masopharyngeal Carcinoma |1,2,5,6,13 |
#> |Neuroblastoma |1,5,18 |
#> |Oesophagus |1,2,4,5,6,13,17 |
#> |Oral gingivo-buccal squamous |1,2,5,7,13,29 |
#> |Osteosarcoma |1,2,5,6,13,30 |
#> |Ovary |1,3,5 |
#> |Pancreas |1,2,3,5,6,13 |
#> |Paraganglioma |1,5 |
#> |Pilocytic Astrocytoma |1,5,19 |
#> |Prostate |1,5,6 |
#> |Stomach |1,2,5,13,15,17,18,20,21,26,28 |
#> |Thyroid |1,2,5,13 |
#> |Urothelial Carcinoma |1,2,5,13,22 |
#> |Uterine Carcinoma |1,2,5,6,10,13,14,26 |
#> |Uterine Carcinosarcoma |1,2,5,6,10,13 |
#> |Uveal Melanoma |1,5,6 |
l2 <- get_sig_cancer_type_index(sig_type = "SBS")
#>
#>
#> |cancer type |SBS list |
#> |:-------------------|:--------------------------------------------------------------------|
#> |Biliary-AdenoCA |1,2,3,5,9,12,13,15,17a,17b,18,21,22,24,32,40,44 |
#> |Bladder-TCC |1,2,5,8,13,29,40 |
#> |Bone-Benign |1,2,5,8,13,40,51,60 |
#> |Bone-Epith |1,2,5,13,17a,17b,40 |
#> |Bone-Osteosarc |1,2,3,5,8,13,17a,17b,30,40 |
#> |Breast-AdenoCA |1,2,3,5,8,9,13,17a,17b,18,37,40,41 |
#> |Breast-DCIS |1,5,40 |
#> |Breast-LobularCA |1,2,3,5,13,18 |
#> |CNS-GBM |1,5,11,30,37,40 |
#> |CNS-Medullo |1,5,8,18,39,40,60 |
#> |CNS-Oligo |1,5,8,40 |
#> |CNS-PiloAstro |1,5,19,23,40 |
#> |Cervix-AdenoCA |1,2,5,13 |
#> |Cervix-SCC |1,2,5,13,18,40 |
#> |ColoRect-AdenoCA |1,5,10a,10b,15,17a,17b,18,28,37,40,44,45 |
#> |Eso-AdenoCA |1,2,3,5,13,17a,17b,18,28,40 |
#> |Head-SCC |1,2,3,4,5,7a,7b,7d,13,16,17a,17b,18,33,40 |
#> |Kidney-ChRCC |1,2,5,13,17a,17b,29,40 |
#> |Kidney-RCC |1,2,5,13,22,29,40,41 |
#> |Liver-HCC |1,4,5,6,9,12,14,16,17a,17b,18,19,22,24,26,28,29,30,31,35,40,53,54,56 |
#> |Lung-AdenoCA |1,2,3,4,5,9,13,17a,17b,18,28,40 |
#> |Lung-SCC |1,2,4,5,8,13 |
#> |Lymph-BNHL |1,2,3,5,6,9,13,17a,17b,34,36,37,40,56 |
#> |Lymph-CLL |1,5,9,40 |
#> |Myeloid-AML |1,5,18,31,60 |
#> |Myeloid-MDS |1,5,23 |
#> |Myeloid-MPN |1,2,5,19,23,32,51,58,60 |
#> |Ovary-AdenoCA |1,2,3,5,8,13,18,26,35,39,40,41 |
#> |Panc-AdenoCA |1,2,3,5,6,8,13,17a,17b,18,20,26,28,30,40,51 |
#> |Panc-Endocrine |1,2,3,5,6,8,9,11,13,26,30,36,39 |
#> |Prost-AdenoCA |1,2,3,5,8,13,18,33,37,40,41,45,52,58 |
#> |Skin-Melanoma |1,2,5,7a,7b,7c,7d,13,17a,17b,38,40,58 |
#> |SoftTissue-Leiomyo |1,2,5,13,17a,17b,30,40 |
#> |SoftTissue-Liposarc |1,2,3,5,13,37,40 |
#> |Stomach-AdenoCA |1,2,3,5,9,13,15,17a,17b,18,20,21,26,28,40,41,43,44,51,58 |
#> |Thy-AdenoCA |1,2,5,13,40,58 |
#> |Uterus-AdenoCA |1,2,3,5,6,10a,10b,13,14,15,26,28,40,44 |
l3 <- get_sig_cancer_type_index(sig_type = "DBS", source = "PCAWG", seq_type = "WGS")
#>
#>
#> |cancer type |DBS list |
#> |:-------------------|:-----------------------|
#> |Biliary-AdenoCA |2,4,5,6,7,8,9,11 |
#> |Bladder-TCC |2,4,5,6,9,11 |
#> |Bone-Benign |1,2,5,6,7,8,9,11 |
#> |Bone-Epith |2,4,7,9,11 |
#> |Bone-Osteosarc |1,2,4,5,6,7,9,11 |
#> |Breast-AdenoCA |1,2,3,4,5,6,7,8,9,10,11 |
#> |Breast-DCIS |2,4,6 |
#> |Breast-LobularCA |1,2,4,5,6,8,9,11 |
#> |CNS-GBM |2,3,4,5,6,7,9,10,11 |
#> |CNS-Medullo |1,2,3,4,5,6,7,8,9,10,11 |
#> |CNS-Oligo |2,3,4,5,6,7,9,11 |
#> |CNS-PiloAstro |1,2,3,4,5,6,7,8,9,11 |
#> |Cervix-AdenoCA |4,7,11 |
#> |Cervix-SCC |2,4,6,7,9,11 |
#> |ColoRect-AdenoCA |2,3,4,5,6,7,8,9,10,11 |
#> |Eso-AdenoCA |2,3,4,5,6,7,8,9,11 |
#> |Head-SCC |1,2,3,4,5,6,9,11 |
#> |Kidney-ChRCC |1,2,3,4,5,6,7,8,9,10,11 |
#> |Kidney-RCC |2,4,5,6,7,9,11 |
#> |Liver-HCC |2,3,4,5,6,7,9,11 |
#> |Lung-AdenoCA |2,4,5,6,7,8,11 |
#> |Lung-SCC |2,4,11 |
#> |Lymph-BNHL |2,3,4,5,6,7,8,9,10,11 |
#> |Lymph-CLL |2,3,4,5,6,7,8,9,11 |
#> |Myeloid-AML |1,3,4,5,6,7,9 |
#> |Myeloid-MDS |1,3 |
#> |Myeloid-MPN |1,2,3,4,5,6,7,9,11 |
#> |Ovary-AdenoCA |2,3,4,5,6,7,9,11 |
#> |Panc-AdenoCA |1,2,3,4,5,6,7,9,11 |
#> |Panc-Endocrine |2,3,4,5,6,7,8,9,11 |
#> |Prost-AdenoCA |1,2,3,4,5,6,7,8,9,10,11 |
#> |Skin-Melanoma |1,2,4,6,7,9,11 |
#> |SoftTissue-Leiomyo |1,2,4,6,9,11 |
#> |SoftTissue-Liposarc |1,2,4,6,11 |
#> |Stomach-AdenoCA |1,2,3,4,5,6,7,9,10,11 |
#> |Thy-AdenoCA |1,2,4,5,6,7,8,9,11 |
#> |Uterus-AdenoCA |2,3,4,5,6,7,9,10,11 |
l4 <- get_sig_cancer_type_index(sig_type = "ID")
#>
#>
#> |cancer type |ID list |
#> |:-------------------|:--------------------------------|
#> |Biliary-AdenoCA |1,2,3,5,6,8,11 |
#> |Bladder-TCC |1,2,3,4,5,8,9,10 |
#> |Bone-Benign |1,2,5,6,9,10,12 |
#> |Bone-Epith |1,2,5,8,9 |
#> |Bone-Osteosarc |1,2,3,4,5,8,9,14 |
#> |Breast-AdenoCA |1,2,4,5,6,8,9,11 |
#> |Breast-DCIS |1,5,8 |
#> |Breast-LobularCA |1,2,5,6,8,9 |
#> |CNS-GBM |1,2,4,5,8,9 |
#> |CNS-Medullo |1,2,5,8,9,10,12,14,16 |
#> |CNS-Oligo |1,2,4,5,8,9 |
#> |CNS-PiloAstro |1,2,3,4,5,6,8,9,10,11,12,14,17 |
#> |Cervix-AdenoCA |1 |
#> |Cervix-SCC |1,2,6,9,10 |
#> |ColoRect-AdenoCA |1,2,5,14 |
#> |Eso-AdenoCA |1,2,4,5,6,8,9,10,14 |
#> |Head-SCC |1,2,3,5,6,8,9,10,11,12 |
#> |Kidney-ChRCC |1,2,3,4,5,6,8,9,11 |
#> |Kidney-RCC |1,2,3,4,5,6,8,9,11 |
#> |Liver-HCC |1,2,3,5,6,8,9,11,13 |
#> |Lung-AdenoCA |1,2,3,5,6,8,9,12 |
#> |Lung-SCC |1,2,3,6,8,9 |
#> |Lymph-BNHL |1,2,4,5,6,8,9 |
#> |Lymph-CLL |1,2,4,5,8,9 |
#> |Myeloid-AML |1,2,3,5,9,10,11 |
#> |Myeloid-MDS |1,3,5 |
#> |Myeloid-MPN |1,2,3,4,5,6,7,8,9,10,11,16 |
#> |Ovary-AdenoCA |1,2,4,5,6,8,9 |
#> |Panc-AdenoCA |1,2,5,6,8,9,10,11,12 |
#> |Panc-Endocrine |1,2,3,4,5,6,8,9,10,11 |
#> |Prost-AdenoCA |1,2,3,4,5,6,7,8,9,10,11,12,13,17 |
#> |Skin-Melanoma |1,2,4,5,8,9,13 |
#> |SoftTissue-Leiomyo |1,2,5,8,9 |
#> |SoftTissue-Liposarc |1,2,3,5,8,9,12,14 |
#> |Stomach-AdenoCA |1,2,3,4,5,6,7,8,9,12,13,14,17 |
#> |Thy-AdenoCA |1,2,3,4,5,8,9,10,12,13 |
#> |Uterus-AdenoCA |1,2,4,6,8,9 |
l5 <- get_sig_cancer_type_index(keyword = "breast")
#> Info found in COSMIC v2 database:
#> cancer type signature index
#> 5 Breast 1,2,3,5,6,8,10,13,17,18,20,26,30
#> Info found in COSMIC v3 database:
#> cancer type source scale signature type
#> 1 Breast-AdenoCA PCAWG WGS SBS
#> 2 Breast-AdenoCA PCAWG WGS DBS
#> 3 Breast-AdenoCA PCAWG WGS ID
#> 4 Breast-DCIS PCAWG WGS SBS
#> 5 Breast-DCIS PCAWG WGS DBS
#> 6 Breast-DCIS PCAWG WGS ID
#> 7 Breast-LobularCA PCAWG WGS SBS
#> 8 Breast-LobularCA PCAWG WGS DBS
#> 9 Breast-LobularCA PCAWG WGS ID
#> 10 Breast-Fibroadenoma nonPCAWG WES SBS
#> 11 Breast-Fibroadenoma nonPCAWG WES DBS
#> 12 Breast-Fibroadenoma nonPCAWG WES ID
#> 13 Breast-cancer nonPCAWG WES SBS
#> 14 Breast-cancer nonPCAWG WES DBS
#> 15 Breast-cancer nonPCAWG WES ID
#> 16 Breast-cancer nonPCAWG WGS SBS
#> 17 Breast-cancer nonPCAWG WGS DBS
#> 18 Breast-cancer nonPCAWG WGS ID
#> 19 Breast-cancer TCGA WES SBS
#> 20 Breast-cancer TCGA WES DBS
#> 21 Breast-cancer TCGA WES ID
#> signature index
#> 1 1,2,3,5,8,9,13,17a,17b,18,37,40,41
#> 2 1,2,3,4,5,6,7,8,9,10,11
#> 3 1,2,4,5,6,8,9,11
#> 4 1,5,40
#> 5 2,4,6
#> 6 1,5,8
#> 7 1,2,3,5,13,18
#> 8 1,2,4,5,6,8,9,11
#> 9 1,2,5,6,8,9
#> 10 1,2,8,18,31,32,42,50
#> 11 <NA>
#> 12 <NA>
#> 13 1,2,3,5,6,7a,7b,7c,7d,8,10a,10b,13,14,15,16,17a,17b,18,19,20,21,22,26,30,31,32,33,34,35,36,37,38,39,40,41,42,44,46,48,49,50,52,54,56,57,58,59
#> 14 <NA>
#> 15 <NA>
#> 16 1,2,3,5,8,13,17a,17b,18,21,26,30,34,39,41,44,60
#> 17 <NA>
#> 18 <NA>
#> 19 1,2,3,5,6,7a,7b,7c,7d,10a,10b,11,13,14,15,16,17a,18,19,20,21,22,23,25,26,28,29,30,31,32,33,34,36,38,42,44,45,47,48,49,50,51,52,54,56,57,58,59,60
#> 20 <NA>
#> 21 1,2,6,7,15
l1
#> $`Adrenocortical carcinoma`
#> [1] "1" "2" "4" "5" "6" "13" "18"
#>
#> $`Acute lymphoblastic leukemia`
#> [1] "1" "2" "5" "13"
#>
#> $`Acute myelogenous leukemia`
#> [1] "1" "5"
#>
#> $Bladder
#> [1] "1" "2" "5" "10" "13"
#>
#> $Breast
#> [1] "1" "2" "3" "5" "6" "8" "10" "13" "17" "18" "20" "26" "30"
#>
#> $Cervix
#> [1] "1" "2" "5" "6" "10" "13" "26"
#>
#> $Chondrosarcoma
#> [1] "1" "5"
#>
#> $`B-cell chronic lymphocytic leukemia`
#> [1] "1" "2" "5" "9" "13"
#>
#> $Colorectum
#> [1] "1" "5" "6" "10"
#>
#> $Glioblastoma
#> [1] "1" "5" "11"
#>
#> $`Glioma Low grade`
#> [1] "1" "5" "6" "14"
#>
#> $`Head and neck`
#> [1] "1" "2" "4" "5" "7" "13"
#>
#> $`Kidney Chromophobe`
#> [1] "1" "5" "6"
#>
#> $`Kidney Clear Cell`
#> [1] "1" "5" "6" "27"
#>
#> $`Kidney Papillary`
#> [1] "1" "2" "5" "13"
#>
#> $Liver
#> [1] "1" "4" "5" "6" "12" "16" "17" "22" "23" "24"
#>
#> $`Lung Adeno`
#> [1] "1" "2" "4" "5" "6" "13" "17"
#>
#> $`Lung Small Cell`
#> [1] "1" "4" "5" "15"
#>
#> $`Lung Squamous`
#> [1] "1" "2" "4" "5" "13"
#>
#> $`Lymphoma B-cell`
#> [1] "1" "2" "5" "9" "13" "17"
#>
#> $`Lymphoma Hodgkin`
#> [1] "1" "5" "25"
#>
#> $Medulloblastoma
#> [1] "1" "5" "8"
#>
#> $Melanoma
#> [1] "1" "5" "7" "11" "17"
#>
#> $`Masopharyngeal Carcinoma`
#> [1] "1" "2" "5" "13" "1" "2" "5" "6" "13"
#>
#> $Neuroblastoma
#> [1] "1" "5" "18"
#>
#> $Oesophagus
#> [1] "1" "2" "4" "5" "6" "13" "17"
#>
#> $`Oral gingivo-buccal squamous`
#> [1] "1" "2" "5" "7" "13" "29"
#>
#> $Osteosarcoma
#> [1] "1" "2" "5" "6" "13" "30"
#>
#> $Ovary
#> [1] "1" "3" "5"
#>
#> $Pancreas
#> [1] "1" "2" "3" "5" "6" "13"
#>
#> $Paraganglioma
#> [1] "1" "5"
#>
#> $`Pilocytic Astrocytoma`
#> [1] "1" "5" "19"
#>
#> $Prostate
#> [1] "1" "5" "6"
#>
#> $Stomach
#> [1] "1" "2" "5" "13" "15" "17" "18" "20" "21" "26" "28"
#>
#> $Thyroid
#> [1] "1" "2" "5" "13"
#>
#> $`Urothelial Carcinoma`
#> [1] "1" "2" "5" "13" "22"
#>
#> $`Uterine Carcinoma`
#> [1] "1" "2" "5" "6" "10" "13" "14" "26"
#>
#> $`Uterine Carcinosarcoma`
#> [1] "1" "2" "5" "6" "10" "13"
#>
#> $`Uveal Melanoma`
#> [1] "1" "5" "6"
#>
l2
#> $`Biliary-AdenoCA`
#> [1] "1" "2" "3" "5" "9" "12" "13" "15" "17a" "17b" "18" "21"
#> [13] "22" "24" "32" "40" "44"
#>
#> $`Bladder-TCC`
#> [1] "1" "2" "5" "8" "13" "29" "40"
#>
#> $`Bone-Benign`
#> [1] "1" "2" "5" "8" "13" "40" "51" "60"
#>
#> $`Bone-Epith`
#> [1] "1" "2" "5" "13" "17a" "17b" "40"
#>
#> $`Bone-Osteosarc`
#> [1] "1" "2" "3" "5" "8" "13" "17a" "17b" "30" "40"
#>
#> $`Breast-AdenoCA`
#> [1] "1" "2" "3" "5" "8" "9" "13" "17a" "17b" "18" "37" "40"
#> [13] "41"
#>
#> $`Breast-DCIS`
#> [1] "1" "5" "40"
#>
#> $`Breast-LobularCA`
#> [1] "1" "2" "3" "5" "13" "18"
#>
#> $`CNS-GBM`
#> [1] "1" "5" "11" "30" "37" "40"
#>
#> $`CNS-Medullo`
#> [1] "1" "5" "8" "18" "39" "40" "60"
#>
#> $`CNS-Oligo`
#> [1] "1" "5" "8" "40"
#>
#> $`CNS-PiloAstro`
#> [1] "1" "5" "19" "23" "40"
#>
#> $`Cervix-AdenoCA`
#> [1] "1" "2" "5" "13"
#>
#> $`Cervix-SCC`
#> [1] "1" "2" "5" "13" "18" "40"
#>
#> $`ColoRect-AdenoCA`
#> [1] "1" "5" "10a" "10b" "15" "17a" "17b" "18" "28" "37" "40" "44"
#> [13] "45"
#>
#> $`Eso-AdenoCA`
#> [1] "1" "2" "3" "5" "13" "17a" "17b" "18" "28" "40"
#>
#> $`Head-SCC`
#> [1] "1" "2" "3" "4" "5" "7a" "7b" "7d" "13" "16" "17a" "17b"
#> [13] "18" "33" "40"
#>
#> $`Kidney-ChRCC`
#> [1] "1" "2" "5" "13" "17a" "17b" "29" "40"
#>
#> $`Kidney-RCC`
#> [1] "1" "2" "5" "13" "22" "29" "40" "41"
#>
#> $`Liver-HCC`
#> [1] "1" "4" "5" "6" "9" "12" "14" "16" "17a" "17b" "18" "19"
#> [13] "22" "24" "26" "28" "29" "30" "31" "35" "40" "53" "54" "56"
#>
#> $`Lung-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "9" "13" "17a" "17b" "18" "28" "40"
#>
#> $`Lung-SCC`
#> [1] "1" "2" "4" "5" "8" "13"
#>
#> $`Lymph-BNHL`
#> [1] "1" "2" "3" "5" "6" "9" "13" "17a" "17b" "34" "36" "37"
#> [13] "40" "56"
#>
#> $`Lymph-CLL`
#> [1] "1" "5" "9" "40"
#>
#> $`Myeloid-AML`
#> [1] "1" "5" "18" "31" "60"
#>
#> $`Myeloid-MDS`
#> [1] "1" "5" "23"
#>
#> $`Myeloid-MPN`
#> [1] "1" "2" "5" "19" "23" "32" "51" "58" "60"
#>
#> $`Ovary-AdenoCA`
#> [1] "1" "2" "3" "5" "8" "13" "18" "26" "35" "39" "40" "41"
#>
#> $`Panc-AdenoCA`
#> [1] "1" "2" "3" "5" "6" "8" "13" "17a" "17b" "18" "20" "26"
#> [13] "28" "30" "40" "51"
#>
#> $`Panc-Endocrine`
#> [1] "1" "2" "3" "5" "6" "8" "9" "11" "13" "26" "30" "36" "39"
#>
#> $`Prost-AdenoCA`
#> [1] "1" "2" "3" "5" "8" "13" "18" "33" "37" "40" "41" "45" "52" "58"
#>
#> $`Skin-Melanoma`
#> [1] "1" "2" "5" "7a" "7b" "7c" "7d" "13" "17a" "17b" "38" "40"
#> [13] "58"
#>
#> $`SoftTissue-Leiomyo`
#> [1] "1" "2" "5" "13" "17a" "17b" "30" "40"
#>
#> $`SoftTissue-Liposarc`
#> [1] "1" "2" "3" "5" "13" "37" "40"
#>
#> $`Stomach-AdenoCA`
#> [1] "1" "2" "3" "5" "9" "13" "15" "17a" "17b" "18" "20" "21"
#> [13] "26" "28" "40" "41" "43" "44" "51" "58"
#>
#> $`Thy-AdenoCA`
#> [1] "1" "2" "5" "13" "40" "58"
#>
#> $`Uterus-AdenoCA`
#> [1] "1" "2" "3" "5" "6" "10a" "10b" "13" "14" "15" "26" "28"
#> [13] "40" "44"
#>
l3
#> $`Biliary-AdenoCA`
#> [1] "2" "4" "5" "6" "7" "8" "9" "11"
#>
#> $`Bladder-TCC`
#> [1] "2" "4" "5" "6" "9" "11"
#>
#> $`Bone-Benign`
#> [1] "1" "2" "5" "6" "7" "8" "9" "11"
#>
#> $`Bone-Epith`
#> [1] "2" "4" "7" "9" "11"
#>
#> $`Bone-Osteosarc`
#> [1] "1" "2" "4" "5" "6" "7" "9" "11"
#>
#> $`Breast-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#>
#> $`Breast-DCIS`
#> [1] "2" "4" "6"
#>
#> $`Breast-LobularCA`
#> [1] "1" "2" "4" "5" "6" "8" "9" "11"
#>
#> $`CNS-GBM`
#> [1] "2" "3" "4" "5" "6" "7" "9" "10" "11"
#>
#> $`CNS-Medullo`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#>
#> $`CNS-Oligo`
#> [1] "2" "3" "4" "5" "6" "7" "9" "11"
#>
#> $`CNS-PiloAstro`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "11"
#>
#> $`Cervix-AdenoCA`
#> [1] "4" "7" "11"
#>
#> $`Cervix-SCC`
#> [1] "2" "4" "6" "7" "9" "11"
#>
#> $`ColoRect-AdenoCA`
#> [1] "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#>
#> $`Eso-AdenoCA`
#> [1] "2" "3" "4" "5" "6" "7" "8" "9" "11"
#>
#> $`Head-SCC`
#> [1] "1" "2" "3" "4" "5" "6" "9" "11"
#>
#> $`Kidney-ChRCC`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#>
#> $`Kidney-RCC`
#> [1] "2" "4" "5" "6" "7" "9" "11"
#>
#> $`Liver-HCC`
#> [1] "2" "3" "4" "5" "6" "7" "9" "11"
#>
#> $`Lung-AdenoCA`
#> [1] "2" "4" "5" "6" "7" "8" "11"
#>
#> $`Lung-SCC`
#> [1] "2" "4" "11"
#>
#> $`Lymph-BNHL`
#> [1] "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#>
#> $`Lymph-CLL`
#> [1] "2" "3" "4" "5" "6" "7" "8" "9" "11"
#>
#> $`Myeloid-AML`
#> [1] "1" "3" "4" "5" "6" "7" "9"
#>
#> $`Myeloid-MDS`
#> [1] "1" "3"
#>
#> $`Myeloid-MPN`
#> [1] "1" "2" "3" "4" "5" "6" "7" "9" "11"
#>
#> $`Ovary-AdenoCA`
#> [1] "2" "3" "4" "5" "6" "7" "9" "11"
#>
#> $`Panc-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "6" "7" "9" "11"
#>
#> $`Panc-Endocrine`
#> [1] "2" "3" "4" "5" "6" "7" "8" "9" "11"
#>
#> $`Prost-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11"
#>
#> $`Skin-Melanoma`
#> [1] "1" "2" "4" "6" "7" "9" "11"
#>
#> $`SoftTissue-Leiomyo`
#> [1] "1" "2" "4" "6" "9" "11"
#>
#> $`SoftTissue-Liposarc`
#> [1] "1" "2" "4" "6" "11"
#>
#> $`Stomach-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "6" "7" "9" "10" "11"
#>
#> $`Thy-AdenoCA`
#> [1] "1" "2" "4" "5" "6" "7" "8" "9" "11"
#>
#> $`Uterus-AdenoCA`
#> [1] "2" "3" "4" "5" "6" "7" "9" "10" "11"
#>
l4
#> $`Biliary-AdenoCA`
#> [1] "1" "2" "3" "5" "6" "8" "11"
#>
#> $`Bladder-TCC`
#> [1] "1" "2" "3" "4" "5" "8" "9" "10"
#>
#> $`Bone-Benign`
#> [1] "1" "2" "5" "6" "9" "10" "12"
#>
#> $`Bone-Epith`
#> [1] "1" "2" "5" "8" "9"
#>
#> $`Bone-Osteosarc`
#> [1] "1" "2" "3" "4" "5" "8" "9" "14"
#>
#> $`Breast-AdenoCA`
#> [1] "1" "2" "4" "5" "6" "8" "9" "11"
#>
#> $`Breast-DCIS`
#> [1] "1" "5" "8"
#>
#> $`Breast-LobularCA`
#> [1] "1" "2" "5" "6" "8" "9"
#>
#> $`CNS-GBM`
#> [1] "1" "2" "4" "5" "8" "9"
#>
#> $`CNS-Medullo`
#> [1] "1" "2" "5" "8" "9" "10" "12" "14" "16"
#>
#> $`CNS-Oligo`
#> [1] "1" "2" "4" "5" "8" "9"
#>
#> $`CNS-PiloAstro`
#> [1] "1" "2" "3" "4" "5" "6" "8" "9" "10" "11" "12" "14" "17"
#>
#> $`Cervix-AdenoCA`
#> [1] "1"
#>
#> $`Cervix-SCC`
#> [1] "1" "2" "6" "9" "10"
#>
#> $`ColoRect-AdenoCA`
#> [1] "1" "2" "5" "14"
#>
#> $`Eso-AdenoCA`
#> [1] "1" "2" "4" "5" "6" "8" "9" "10" "14"
#>
#> $`Head-SCC`
#> [1] "1" "2" "3" "5" "6" "8" "9" "10" "11" "12"
#>
#> $`Kidney-ChRCC`
#> [1] "1" "2" "3" "4" "5" "6" "8" "9" "11"
#>
#> $`Kidney-RCC`
#> [1] "1" "2" "3" "4" "5" "6" "8" "9" "11"
#>
#> $`Liver-HCC`
#> [1] "1" "2" "3" "5" "6" "8" "9" "11" "13"
#>
#> $`Lung-AdenoCA`
#> [1] "1" "2" "3" "5" "6" "8" "9" "12"
#>
#> $`Lung-SCC`
#> [1] "1" "2" "3" "6" "8" "9"
#>
#> $`Lymph-BNHL`
#> [1] "1" "2" "4" "5" "6" "8" "9"
#>
#> $`Lymph-CLL`
#> [1] "1" "2" "4" "5" "8" "9"
#>
#> $`Myeloid-AML`
#> [1] "1" "2" "3" "5" "9" "10" "11"
#>
#> $`Myeloid-MDS`
#> [1] "1" "3" "5"
#>
#> $`Myeloid-MPN`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11" "16"
#>
#> $`Ovary-AdenoCA`
#> [1] "1" "2" "4" "5" "6" "8" "9"
#>
#> $`Panc-AdenoCA`
#> [1] "1" "2" "5" "6" "8" "9" "10" "11" "12"
#>
#> $`Panc-Endocrine`
#> [1] "1" "2" "3" "4" "5" "6" "8" "9" "10" "11"
#>
#> $`Prost-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "10" "11" "12" "13" "17"
#>
#> $`Skin-Melanoma`
#> [1] "1" "2" "4" "5" "8" "9" "13"
#>
#> $`SoftTissue-Leiomyo`
#> [1] "1" "2" "5" "8" "9"
#>
#> $`SoftTissue-Liposarc`
#> [1] "1" "2" "3" "5" "8" "9" "12" "14"
#>
#> $`Stomach-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "6" "7" "8" "9" "12" "13" "14" "17"
#>
#> $`Thy-AdenoCA`
#> [1] "1" "2" "3" "4" "5" "8" "9" "10" "12" "13"
#>
#> $`Uterus-AdenoCA`
#> [1] "1" "2" "4" "6" "8" "9"
#>
l5
#> NULL