Show Copy Number Feature Distributions

show_cn_features(
  features,
  method = "Wang",
  rm_outlier = FALSE,
  ylab = NULL,
  log_y = FALSE,
  return_plotlist = FALSE,
  base_size = 12,
  nrow = 2,
  align = "hv",
  ...
)

Arguments

features: a feature list generate from sig_tally function.
method: method for feature classification, can be one of "Wang" ("W"), "S" (for method described in Steele et al. 2019), "X" (for method described in Tao et al. 2023).
rm_outlier: default is FALSE, if TRUE, remove outliers. Only works when method is "Wang" ("W").
ylab: lab of y axis.
log_y: logical, if TRUE, show log10 based y axis, only works for input from "Wang" ("W") method.
return_plotlist: if TRUE, return a list of ggplot objects but a combined plot.
base_size: overall font size.
nrow: (optional) Number of rows in the plot grid.
align: (optional) Specifies whether graphs in the grid should be horizontally ("h") or vertically ("v") aligned. Options are "none" (default), "hv" (align in both directions), "h", and "v".
...: other options pass to plot_grid function of cowplot package.

Value

a ggplot object