Build a Substitution Matrix

Build a Substitution Matrix

build_sub_matrix(simple_version = FALSE, max_len_score = 4L)

Arguments

simple_version

if TRUE, just use segmental copy number value.
max_len_score

the maximum score for segment length (should >=4). The maximum score for copy number value is 6 (cannot be changed).

Value

a list.

Examples

sub_list <- build_sub_matrix()
sub_list2 <- build_sub_matrix(simple_version = TRUE)