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build_sub_matrix()
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Build a Substitution Matrix |
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cluster_pam_estimate() cluster_pam()
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Estimate Optimal Number of Cluster for PAM Algorithm |
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extract_seqs()
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Extract Pasted Sequences from Each Chromosome |
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get_score_matrix()
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Get Copy Number Sequence Similarity or Distance Matrix |
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ggseqlogo2() geom_logo2()
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Quick sequence logo plot |
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sh_cluster_split()
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Split Cluster Sequence into List |
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show_seq_logo()
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Show Copy Number Sequence Logos |
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show_seq_shape()
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Show Copy Number Sequence Shapes |
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transform_seqs()
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Coding Copy Number Segments with Letters. |