show_seq_shape.Rd
Show Copy Number Sequence Shapes
show_seq_shape( x, map = NULL, simple_version = FALSE, line_size_scale = 3, x_lab = ifelse(simple_version, "Assumed equal length", "Estimated segment length"), y_lab = "Copy number", nrow = NULL, ncol = NULL, scales = "free_x" )
x | a character vector of sequences or named list of sequences. All sequences must have same width. |
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map | default is |
simple_version | if |
line_size_scale | the scale size for line width. |
x_lab | x lab. |
y_lab | y lab. |
nrow | Number of rows, same as |
ncol | Number of columns, works only when |
scales | Should scales be fixed ( |
a ggplot
object.
p <- show_seq_shape(c("ADGHK")) p x <- list(a = c("ABCDE", "AXFDP"), b = c("KKDFH", "GKDFM")) p2 <- show_seq_shape(x) p2 p3 <- show_seq_shape(c("ABCD"), simple_version = TRUE) p3