Extract sample and region level features

Source: R/features.R

Extract sample and region level features

gcap.extractFeatures(
  ascat_files,
  genome_build = c("hg38", "hg19", "mm10"),
  ascn_data = NULL
)

Arguments

ascat_files

a list of file path. Typically the result of gcap.runASCAT()

genome_build

genome build version, should be one of 'hg38', 'hg19'.

ascn_data

if ascat_files is missing, an alternative data.frame can be provided for ASCN data along with purity and ploidy (optional).

Value

a list.